Sharks exhibit extraordinary morphological diversity across a wide range of ecological niches, yet large-scale, high-resolution comparative digital anatomical datasets of their internal anatomy remain limited. Here we present an open-access 3D shark anatomical repository derived from published X-ray computed tomography (CT) data, featuring manually segmented and systematically annotated models of the chondrocranium, visceral arches, axial skeleton, musculature, and viscera in standardized STL format. The dataset comprises 117 individuals, representing 72 species across 25 families and all nine extant shark orders, including 115 full-body reconstructions and two head-only models. This open-access dataset offers an unprecedented resource for high-precision comparative morphology, biomechanical simulations, and evolutionary research of extant sharks.